fit-pipeline/fit-pipeline.sh

#!/usr/bin/env bash

SCRIPT_DIR=$( cd -- "$( dirname -- "${BASH_SOURCE[0]}" )" &> /dev/null && pwd )

FIT_PIPELINE_DIR=${FIT_PIPELINE_DIR:=$SCRIPT_DIR}

FIT_PIPELINE_TMP_DIR=${FIT_PIPELINE_TMP_DIR:="$FIT_PIPELINE_DIR/tmp"}
mkdir -p $FIT_PIPELINE_TMP_DIR
FIT_PIPELINE_RESULT_DIR=${FIT_PIPELINE_RESULT_DIR:="$FIT_PIPELINE_DIR/result"}
mkdir -p $FIT_PIPELINE_RESULT_DIR

FIT_INPUT="$1"
FIT_INPUT_FILE=$(basename $1)
FIT_INPUT_NAME="${FIT_INPUT_FILE%.*}"
FIT_CSV_INPUT="$FIT_PIPELINE_TMP_DIR/$FIT_INPUT_NAME.csv"
CSV_OUPUT="$FIT_PIPELINE_TMP_DIR/$FIT_INPUT_NAME.modified.csv"
CSV_FIT_OUPUT="$FIT_PIPELINE_RESULT_DIR/$FIT_INPUT_NAME.modified.fit"

echo "$FIT_INPUT"
echo "$FIT_CSV_INPUT"
echo "$CSV_OUPUT"
echo "$CSV_FIT_OUPUT"

java -jar $FIT_PIPELINE_DIR/FitCSVTool.jar -b $FIT_INPUT $FIT_CSV_INPUT

awk 'BEGIN { FS = OFS = "," } ; /Data,[0-9]+,record/ { $20 = $56 ; print $0 } ; 1 { print $0 }' $FIT_CSV_INPUT > $CSV_OUPUT

java -jar $FIT_PIPELINE_DIR/FitCSVTool.jar -c $CSV_OUPUT $CSV_FIT_OUPUT

if [ ! -d $FIT_PIPELINE_DIR/node_modules ]; then
    pushd $FIT_PIPELINE_DIR
    npm ci
    popd
fi
node $FIT_PIPELINE_DIR/fit-pipeline-upload.js $CSV_FIT_OUPUT